PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004500453.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18955.1 Da    PI: 9.1516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004500453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.16.4e-151249542
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    n+s r++t+ kR++ ++KK +EL +LC+++++ i++s 
  XP_004500453.1 12 NDSARKITYNKRKKSLMKKIKELTTLCGIDACAIVYSD 49
                    899*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.745149IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-17159IPR002100Transcription factor, MADS-box
CDDcd002662.15E-24184No hitNo description
PRINTSPR004048.4E-8222IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-23294IPR002100Transcription factor, MADS-box
PfamPF003194.1E-151249IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-82237IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-83758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MRNKVKLAFM INDSARKITY NKRKKSLMKK IKELTTLCGI DACAIVYSDF NSQPEVWPSP  60
WEIERIITKF KAYSEYEQGK KMLDQESFLM QRIVKSKEQL TKVEKNNSEM EQSLILFQCL  120
IRENFIYTLN TVVLNDLACV INEKLKGISL REDELDKNAS TI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004500453.11e-116PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A072UZC24e-81A0A072UZC2_MEDTR; MADS-box transcription factor family protein
STRINGPOPTR_0005s00420.15e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-45AGAMOUS-like 80